Index

Symbols

--config om_crystallography_parameter_tweaker command line option om_monitor command line option --event-list om_monitor command line option --node-pool-size om_monitor command line option --start-time jungfrau_dark command line option --time-resolved om_xes`_gui command line option

-c om_crystallography_parameter_tweaker command line option om_monitor command line option -l om_monitor command line option -n om_monitor command line option -s jungfrau_dark command line option -t om_xes`_gui command line option

A

AcqirisPsana (class in om.data_retrieval_layer.data_sources_psana) adc_threshold (Peakfinder8PeakDetectionParameters attribute) add_frame() (CheetahClassSumsAccumulator method) (CheetahlistFilesWriter method) add_hit_event() (EventCounter method) add_non_hit_event() (EventCounter method) add_sums() (CheetahClassSumsCollector method) adu_per_eV (Panel attribute) adu_per_photon (Panel attribute) analyze_radial_profile() (RadialProfileAnalysis method) apply_calibration() (Jungfrau1MCalibration method) AreaDetectorPsana (class in om.data_retrieval_layer.data_sources_psana) AreaDetectorPsana2 (class in om.data_retrieval_layer.data_sources_psana2)

ArrayFromHdf5File (class in om.data_retrieval_layer.data_sources_common) asapo_data_source (DataRetrievalLayerParameters attribute) asapo_group_id (DataRetrievalLayerParameters attribute) asapo_has_filesystem (DataRetrievalLayerParameters attribute) asapo_path (DataRetrievalLayerParameters attribute) asapo_token (DataRetrievalLayerParameters attribute) asapo_url (DataRetrievalLayerParameters attribute) AsapoDataEventHandler (class in om.data_retrieval_layer.data_event_handlers_asapo) asic_nx (DetectorLayoutInformation attribute) asic_ny (DetectorLayoutInformation attribute) AssembledDetectorPsana (class in om.data_retrieval_layer.data_sources_psana) AssembledDetectorPsana2 (class in om.data_retrieval_layer.data_sources_psana2) average_intensity (FramelistData attribute)

B

background_profile_filename (RadialProfileParameters attribute) background_profile_hdf5_path (RadialProfileParameters attribute) background_subtraction (RadialProfileParameters attribute) background_subtraction_max_fit_bin (RadialProfileParameters attribute) background_subtraction_min_fit_bin (RadialProfileParameters attribute) bad (Detector attribute) bad_pixel_map_filename (BinningParameters attribute) (Peakfinder8PeakDetectionParameters attribute) (RadialProfileParameters attribute) bad_pixel_map_hdf5_path (BinningParameters attribute) (Peakfinder8PeakDetectionParameters attribute) (RadialProfileParameters attribute) bad_pixel_value (BinningParameters attribute) BadRegion (class in om.lib.geometry) badrow (Panel attribute) Beam (class in om.lib.geometry) BeamEnergyAsapo (class in om.data_retrieval_layer.data_sources_asapo) BeamEnergyFromEpicsVariablePsana (class in om.data_retrieval_layer.data_sources_psana)

BeamEnergyFromEpicsVariablePsana2 (class in om.data_retrieval_layer.data_sources_psana2) BeamEnergyPsana (class in om.data_retrieval_layer.data_sources_psana) BeamEnergyPsana2 (class in om.data_retrieval_layer.data_sources_psana2) bin_bad_pixel_map() (Binning method) (BinningPassthrough method) bin_detector_data() (Binning method) (BinningPassthrough method) bin_peak_positions() (Binning method) (BinningPassthrough method) bin_pixel_maps() (Binning method) (BinningPassthrough method) bin_size (BinningParameters attribute) Binning (class in om.algorithms.generic) binning (MonitorParameters attribute) BinningParameters (class in om.lib.parameters) BinningPassthrough (class in om.algorithms.generic) bitshuffle_with_zstd (Hdf5Compression attribute) buffer_size (DataRetrievalLayerParameters attribute)

C

calculate_profile() (RadialProfile method) calculate_spectrum() (EnergySpectrumRetrieval method) check_background_subtraction() (RadialProfileParameters method) check_binning_parameters() (MonitorParameters method) check_hd5_path() (BinningParameters method) (Peakfinder8PeakDetectionParameters method) (RadialProfileParameters method) check_particle_size_estimation() (RadialProfileParameters method) check_peakfinder8_peak_detection_parameters() (MonitorParameters method) check_sample_detection() (RadialProfileParameters method) check_status_file_update_interval() (CheetahParameters class method) check_sums_update_interval() (CheetahParameters method) cheetah (MonitorParameters attribute) CheetahClassSumsAccumulator (class in om.lib.cheetah) CheetahClassSumsCollector (class in om.lib.cheetah) CheetahlistFilesWriter (class in om.lib.cheetah) CheetahParameters (class in om.lib.parameters) CheetahProcessing (class in om.processing_layer.cheetah) CheetahStatusFileWriter (class in om.lib.cheetah) class_sums_filename_prefix (CheetahParameters attribute) class_sums_sending_interval (CheetahParameters attribute) class_sums_update_interval (CheetahParameters attribute) ClassSumData (class in om.lib.cheetah) clear_plots() (CrystallographyPlots method) (RadialProfileAnalysisPlots method)

clen (Panel attribute) clen_for_centering (Panel attribute) clen_from (Panel attribute) close() (HDF5Writer method) cnx (Panel attribute) cny (Panel attribute) coffset (Panel attribute) collect_data() (CheetahProcessing method) (CrystallographyProcessing method) (OmProcessingProtocol method) (StreamingCheetahProcessing method) (SwaxsCheetahProcessing method) (SwaxsProcessing method) (TestProcessing method) (XesProcessing method) common_process_data() (OmCheetahMixin method) configuration_file (OmParameters attribute) crystallography (MonitorParameters attribute) CrystallographyGui (class in om.graphical_interfaces.crystallography_gui) CrystallographyParameters (class in om.lib.parameters) CrystallographyParameterTweaker (class in om.graphical_interfaces.crystallography_parameter_tweaker) CrystallographyPeakFinding (class in om.lib.crystallography) CrystallographyPlots (class in om.lib.crystallography) CrystallographyProcessing (class in om.processing_layer.crystallography) CspadPsana (class in om.data_retrieval_layer.data_sources_psana) CustomBaseModel (class in om.lib.parameters)

D

data (MpiTags attribute) (Panel attribute) data_broadcast_interval (CrystallographyParameters attribute) (RadialProfileParameters attribute) (XesParameters attribute) data_broadcast_url (CrystallographyParameters attribute) (RadialProfileParameters attribute) (XesParameters attribute) data_retrieval_layer (MonitorParameters attribute) (OmParameters attribute) data_sources (DataRetrievalLayerParameters attribute) DataRetrievalLayerParameters (class in om.lib.parameters) DataSourceParameters (class in om.lib.parameters) DataVisualizer (class in om.lib.geometry) dead (MpiTags attribute)

designated_collector_rank() (AsapoDataEventHandler method) (EigerHttpDataEventHandler method) (EventListDataEventHandler method) (Jungfrau1MZmqDataEventHandler method) (OmBaseFileDataEventHandlerMixin method) (OmDataEventHandlerProtocol method) (Psana2DataEventHandler method) (PsanaDataEventHandler method) Detector (class in om.lib.geometry) DetectorDataAsapo (class in om.data_retrieval_layer.data_sources_asapo) DetectorDistanceAsapo (class in om.data_retrieval_layer.data_sources_asapo) DetectorLayoutInformation (class in om.lib.geometry) die (MpiTags attribute) dim_structure (Panel attribute) DiodeTotalIntensityPsana (class in om.data_retrieval_layer.data_sources_psana)

E

Eiger16MFiles (class in om.data_retrieval_layer.data_sources_files) Eiger16MHttp (class in om.data_retrieval_layer.data_sources_http) EigerFilesDataEventHandler (class in om.data_retrieval_layer.data_event_handlers_files) EigerHttpDataEventHandler (class in om.data_retrieval_layer.data_event_handlers_http) emit() (RichHandlerWithAggregation method) end_processing_on_collecting_node() (CheetahProcessing method) (CrystallographyProcessing method) (OmProcessingProtocol method) (StreamingCheetahProcessing method) (SwaxsCheetahProcessing method) (SwaxsProcessing method) (TestProcessing method) (XesProcessing method) end_processing_on_processing_node() (CheetahProcessing method) (CrystallographyProcessing method) (OmProcessingProtocol method) (StreamingCheetahProcessing method) (SwaxsCheetahProcessing method) (SwaxsProcessing method) (TestProcessing method) (XesProcessing method) EnergySpectrumRetrieval (class in om.algorithms.xes) EpicsVariablePsana (class in om.data_retrieval_layer.data_sources_psana) EpicsVariablePsana2 (class in om.data_retrieval_layer.data_sources_psana2) Epix100aPsana (class in om.data_retrieval_layer.data_sources_psana) estimate_particle_size (RadialProfileParameters attribute) event_generator() (AsapoDataEventHandler method) (EigerFilesDataEventHandler method) (EigerHttpDataEventHandler method) (EventListDataEventHandler method) (Jungfrau1MFilesDataEventHandler method) (Jungfrau1MZmqDataEventHandler method) (Lambda1M5FilesDataEventHandler method) (OmDataEventHandlerProtocol method) (PilatusFilesEventHandler method) (Psana2DataEventHandler method) (PsanaDataEventHandler method) (RayonixMccdFilesEventHandler method)

event_id (FramelistData attribute) EventCounter (class in om.lib.event_management) EventIdAsapo (class in om.data_retrieval_layer.data_sources_asapo) EventIdEiger16MFiles (class in om.data_retrieval_layer.data_sources_files) EventIdEiger16MHttp (class in om.data_retrieval_layer.data_sources_http) EventIdFromFilePath (class in om.data_retrieval_layer.data_sources_files) EventIdJungfrau1MFiles (class in om.data_retrieval_layer.data_sources_files) EventIdJungfrau1MZmq (class in om.data_retrieval_layer.data_sources_zmq) EventIdLambda1M5Files (class in om.data_retrieval_layer.data_sources_files) EventIdPsana (class in om.data_retrieval_layer.data_sources_psana) EventIdPsana2 (class in om.data_retrieval_layer.data_sources_psana2) EventListDataEventHandler (class in om.data_retrieval_layer.event_retrieval) EvrCodelistPsana (class in om.data_retrieval_layer.data_sources_psana) EvrCodelistPsana2 (class in om.data_retrieval_layer.data_sources_psana2) EvrCodesPsana (class in om.data_retrieval_layer.data_sources_psana) external_data_request_list_size (CheetahParameters attribute) (CrystallographyParameters attribute) extract_data() (AsapoDataEventHandler method) (EigerFilesDataEventHandler method) (EigerHttpDataEventHandler method) (EventListDataEventHandler method) (Jungfrau1MFilesDataEventHandler method) (Jungfrau1MZmqDataEventHandler method) (Lambda1M5FilesDataEventHandler method) (OmDataEventHandlerProtocol method) (PilatusFilesEventHandler method) (Psana2DataEventHandler method) (PsanaDataEventHandler method) (RayonixMccdFilesEventHandler method)

F

fast_mode (Peakfinder8PeakDetectionParameters attribute) feedback (MpiTags attribute) file_timestamp (Jungfrau1MFrameInfo attribute) filename (FramelistData attribute) find_peaks() (CrystallographyPeakFinding method) (OmPeakDetectionProtocol method) (Peakfinder8PeakDetection method) FloatValueFromConfiguration (class in om.data_retrieval_layer.data_sources_common) flush_files() (CheetahlistFilesWriter method) format() (RichHandlerWithAggregation method) frame_is_hit (FramelistData attribute) FramelistData (class in om.lib.cheetah)

FrameViewer (class in om.graphical_interfaces.frame_viewer) from_file() (GeometryInformation class method) fs (PeakList attribute) fsx (Panel attribute) fsy (Panel attribute) fsz (Panel attribute) furthest_in_fs (Detector attribute) furthest_in_panel (Detector attribute) furthest_in_ss (Detector attribute) furthest_out_fs (Detector attribute) furthest_out_panel (Detector attribute) furthest_out_ss (Detector attribute)

G

geometry_file (CrystallographyParameters attribute) (RadialProfileParameters attribute) (XesParameters attribute) geometry_is_optimized (CrystallographyParameters attribute) GeometryInformation (class in om.lib.geometry) get_adc_thresh() (Peakfinder8PeakDetection method) get_bad_pixel_map() (Peakfinder8PeakDetection method) (RadialProfile method) get_bin_size() (Binning method) (BinningPassthrough method) get_binned_layout_info() (Binning method) (BinningPassthrough method) get_current_filename() (HDF5Writer method) get_current_machine_ip() (in module om.lib.zmq) get_data() (AcqirisPsana method) (AreaDetectorPsana method) (AreaDetectorPsana2 method) (ArrayFromHdf5File method) (AssembledDetectorPsana method) (AssembledDetectorPsana2 method) (BeamEnergyAsapo method) (BeamEnergyFromEpicsVariablePsana method) (BeamEnergyFromEpicsVariablePsana2 method) (BeamEnergyPsana method) (BeamEnergyPsana2 method) (CspadPsana method) (DetectorDataAsapo method) (DetectorDistanceAsapo method) (DiodeTotalIntensityPsana method) (Eiger16MFiles method) (Eiger16MHttp method) (EpicsVariablePsana method) (EpicsVariablePsana2 method) (Epix100aPsana method) (EventIdAsapo method) (EventIdEiger16MFiles method) (EventIdEiger16MHttp method) (EventIdFromFilePath method) (EventIdJungfrau1MFiles method) (EventIdJungfrau1MZmq method) (EventIdLambda1M5Files method) (EventIdPsana method) (EventIdPsana2 method) (EvrCodelistPsana method) (EvrCodelistPsana2 method) (EvrCodesPsana method) (FloatValueFromConfiguration method) (IntValueFromConfiguration method) (Jungfrau1MFiles method) (Jungfrau1MZmq method) (Lambda1M5Files method) (LclsExtraPsana method) (OmDataSourceProtocol method) (OpalPsana method) (PilatusSingleFrameFiles method) (RayonixMccdSingleFrameFiles method) (RayonixPsana method) (TimestampAsapo method) (TimestampEiger16MHttp method) (TimestampFromEvent method) (TimestampFromFileModificationTime method) (TimestampJungfrau1MFiles method) (TimestampJungfrau1MZmq method) (TimestampPsana method) (TimestampPsana2 method) (Wave8TotalIntensityPsana method)

get_detector_distance_offset() (GeometryInformation method) get_layout_info() (GeometryInformation method) get_local_bg_radius() (Peakfinder8PeakDetection method) get_max_pixel_count() (Peakfinder8PeakDetection method) get_max_res() (Peakfinder8PeakDetection method) get_min_array_shape_for_visualization() (DataVisualizer method) get_min_pixel_count() (Peakfinder8PeakDetection method) get_min_res() (Peakfinder8PeakDetection method) get_minimum_snr() (Peakfinder8PeakDetection method) get_num_events() (EventCounter method) get_num_hits() (EventCounter method) get_num_written_frames() (HDF5Writer method) get_pixel_maps() (DataVisualizer method) (GeometryInformation method) get_pixel_size() (GeometryInformation method) get_radial_bin_labels() (RadialProfile method) get_rank_for_frame_request() (EventCounter method) get_request() (ZmqResponder method) get_start_timestamp() (EventCounter method) get_sums_for_sending() (CheetahClassSumsAccumulator method) get_visualization_pixel_maps() (DataVisualizer method) guinier_qmax (RadialProfileParameters attribute) guinier_qmin (RadialProfileParameters attribute) gzip (Hdf5Compression attribute)

H

h (Panel attribute) h5file (Jungfrau1MFrameInfo attribute) hdf5_fields (CheetahParameters attribute) hdf5_file_compression (CheetahParameters attribute) hdf5_file_compression_shuffle (CheetahParameters attribute) hdf5_file_data_type (CheetahParameters attribute) hdf5_file_gzip_compression_level (CheetahParameters attribute)

hdf5_file_max_num_peaks (CheetahParameters attribute) hdf5_file_zstd_compression_level (CheetahParameters attribute) Hdf5Compression (class in om.lib.parameters) HDF5Writer (class in om.lib.cheetah) hit_frame_sending_interval (CrystallographyParameters attribute) (RadialProfileParameters attribute) (XesParameters attribute)

I

import_class_from_layer() (in module om.lib.layer_management) import_data_source_class() (in module om.lib.layer_management) index (Jungfrau1MFrameInfo attribute) index_in_file (FramelistData attribute) initialize_collecting_node() (CheetahProcessing method) (CrystallographyProcessing method) (OmProcessingProtocol method) (StreamingCheetahProcessing method) (SwaxsCheetahProcessing method) (SwaxsProcessing method) (TestProcessing method) (XesProcessing method) initialize_data_source() (AreaDetectorPsana method) (AreaDetectorPsana2 method) (ArrayFromHdf5File method) (BeamEnergyFromEpicsVariablePsana method) (BeamEnergyFromEpicsVariablePsana2 method) (BeamEnergyPsana method) (BeamEnergyPsana2 method) (CspadPsana method) (EventIdPsana method) (EventIdPsana2 method) (EvrCodelistPsana method) (EvrCodelistPsana2 method) (EvrCodesPsana method) (FloatValueFromConfiguration method) (IntValueFromConfiguration method) (LclsExtraPsana method) (OmBaseAsapoDataSourceMixin method) (OmBaseFileDataSourceMixin method) (OmBaseGenericDataSourceMixin method) (OmBaseZmqDataSourceMixin method) (OmDataSourceProtocol method) (OmDetectorInterfacePsana2DataSourceMixin method) (OmDetectorInterfacePsanaDataSourceMixin method) (OmJungfrau1MDataSourceMixin method) (TimestampAsapo method) (TimestampFromEvent method) (TimestampPsana method) (TimestampPsana2 method) initialize_event_data_retrieval() (AsapoDataEventHandler method) (EigerFilesDataEventHandler method) (EigerHttpDataEventHandler method) (EventListDataEventHandler method) (Jungfrau1MFilesDataEventHandler method) (Jungfrau1MZmqDataEventHandler method) (Lambda1M5FilesDataEventHandler method) (OmDataEventHandlerProtocol method) (PilatusFilesEventHandler method) (Psana2DataEventHandler method) (PsanaDataEventHandler method) (RayonixMccdFilesEventHandler method)

initialize_event_handling_on_collecting_node() (AsapoDataEventHandler method) (EigerHttpDataEventHandler method) (EventListDataEventHandler method) (Jungfrau1MZmqDataEventHandler method) (OmBaseFileDataEventHandlerMixin method) (OmDataEventHandlerProtocol method) (Psana2DataEventHandler method) (PsanaDataEventHandler method) initialize_event_handling_on_processing_node() (AsapoDataEventHandler method) (EigerFilesDataEventHandler method) (EigerHttpDataEventHandler method) (EventListDataEventHandler method) (Jungfrau1MFilesDataEventHandler method) (Jungfrau1MZmqDataEventHandler method) (Lambda1M5FilesDataEventHandler method) (OmDataEventHandlerProtocol method) (PilatusFilesEventHandler method) (Psana2DataEventHandler method) (PsanaDataEventHandler method) (RayonixMccdFilesEventHandler method) initialize_processing_node() (CheetahProcessing method) (CrystallographyProcessing method) (OmProcessingProtocol method) (StreamingCheetahProcessing method) (SwaxsCheetahProcessing method) (SwaxsProcessing method) (TestProcessing method) (XesProcessing method) INPUT jungfrau_dark command line option INPUT_URL jungfrau_zmq_receiver command line option instantiate_data_sources() (in module om.data_retrieval_layer.data_event_handlers_common) intensity (PeakList attribute) intensity_threshold (XesParameters attribute) IntValueFromConfiguration (class in om.data_retrieval_layer.data_sources_common) is_fsss (BadRegion attribute) is_passthrough() (Binning method) (BinningPassthrough method)

J

Jungfrau1MCalibration (class in om.algorithms.calibration) Jungfrau1MFiles (class in om.data_retrieval_layer.data_sources_files) Jungfrau1MFilesDataEventHandler (class in om.data_retrieval_layer.data_event_handlers_files) Jungfrau1MFrameInfo (class in om.data_retrieval_layer.data_sources_common) Jungfrau1MZmq (class in om.data_retrieval_layer.data_sources_zmq) Jungfrau1MZmqDataEventHandler (class in om.data_retrieval_layer.data_event_handlers_zmq) jungfrau_dark command line option --start-time -s INPUT OUTPUT

jungfrau_zmq_receiver command line option INPUT_URL OUTPUT_URL

L

Lambda1M5Files (class in om.data_retrieval_layer.data_sources_files) Lambda1M5FilesDataEventHandler (class in om.data_retrieval_layer.data_event_handlers_files) LclsExtraPsana (class in om.data_retrieval_layer.data_sources_psana)

listen() (in module om.tools.jungfrau_zmq_receiver) load_configuration_parameters() (in module om.lib.files) load_hdf5_data() (in module om.lib.files) local_bg_radius (Peakfinder8PeakDetectionParameters attribute)

M

mask (Panel attribute) mask_bad (Detector attribute) mask_file (Panel attribute) mask_good (Detector attribute) max_adu (Panel attribute) max_fs (BadRegion attribute) max_num_peaks (Peakfinder8PeakDetectionParameters attribute) max_num_peaks_for_hit (CrystallographyParameters attribute) max_pixel_count (Peakfinder8PeakDetectionParameters attribute) max_pixel_intensity (PeakList attribute) max_res (Peakfinder8PeakDetectionParameters attribute) max_row_in_pix_for_integration (XesParameters attribute) max_ss (BadRegion attribute) max_x (BadRegion attribute) max_y (BadRegion attribute) maximum_roi1_to_roi2_intensity_ratio_for_sample (RadialProfileParameters attribute) min_fs (BadRegion attribute) min_good_pix_count (BinningParameters attribute) min_num_peaks_for_hit (CrystallographyParameters attribute) min_pixel_count (Peakfinder8PeakDetectionParameters attribute) min_res (Peakfinder8PeakDetectionParameters attribute) min_row_in_pix_for_integration (XesParameters attribute) min_ss (BadRegion attribute) min_x (BadRegion attribute) min_y (BadRegion attribute) minimum_roi1_to_roi2_intensity_ratio_for_sample (RadialProfileParameters attribute) minimum_snr (Peakfinder8PeakDetectionParameters attribute) model_config (BinningParameters attribute) (CheetahParameters attribute) (CrystallographyParameters attribute) (CustomBaseModel attribute) (DataRetrievalLayerParameters attribute) (DataSourceParameters attribute) (MonitorParameters attribute) (OmParameters attribute) (Peakfinder8PeakDetectionParameters attribute) (RadialProfileParameters attribute) (XesParameters attribute) module om om.algorithms om.algorithms.calibration om.algorithms.common om.algorithms.crystallography om.algorithms.generic om.algorithms.xes om.data_retrieval_layer om.data_retrieval_layer.data_event_handlers_asapo om.data_retrieval_layer.data_event_handlers_common om.data_retrieval_layer.data_event_handlers_files om.data_retrieval_layer.data_event_handlers_http om.data_retrieval_layer.data_event_handlers_psana om.data_retrieval_layer.data_event_handlers_psana2 om.data_retrieval_layer.data_event_handlers_zmq om.data_retrieval_layer.data_sources_asapo om.data_retrieval_layer.data_sources_common om.data_retrieval_layer.data_sources_files om.data_retrieval_layer.data_sources_http om.data_retrieval_layer.data_sources_psana om.data_retrieval_layer.data_sources_psana2 om.data_retrieval_layer.data_sources_zmq om.data_retrieval_layer.event_retrieval om.graphical_interfaces om.graphical_interfaces.common om.graphical_interfaces.crystallography_gui om.graphical_interfaces.crystallography_parameter_tweaker om.graphical_interfaces.frame_viewer om.graphical_interfaces.swaxs_gui om.graphical_interfaces.xes_gui om.lib om.lib.cheetah om.lib.crystallography om.lib.event_management om.lib.exceptions om.lib.files om.lib.geometry om.lib.layer_management om.lib.logging om.lib.parameters om.lib.protocols om.lib.radial_profile om.lib.xes om.lib.zmq om.lib.zmq_qt om.parallelization_layer om.parallelization_layer.mpi om.parallelization_layer.multiprocessing om.processing_layer om.processing_layer.cheetah om.processing_layer.crystallography om.processing_layer.swaxs om.processing_layer.testing om.processing_layer.xes om.tools om.tools.jungfrau_dark om.tools.jungfrau_zmq_receiver

MonitorParameters (class in om.lib.parameters) MpiParallelization (class in om.parallelization_layer.mpi) MpiTags (class in om.parallelization_layer.mpi) MultiprocessingParallelization (class in om.parallelization_layer.multiprocessing)

N

nasics_x (DetectorLayoutInformation attribute) nasics_y (DetectorLayoutInformation attribute) no_index (Panel attribute) node_pool_size (DataRetrievalLayerParameters attribute) non_hit_frame_sending_interval (CrystallographyParameters attribute) (RadialProfileParameters attribute) (XesParameters attribute)

none (Hdf5Compression attribute) num_frames (ClassSumData attribute) num_hits_in_cum_radial_avg (RadialProfileParameters attribute) num_peaks (FramelistData attribute) (PeakList attribute) num_pixel_per_bin_in_radial_statistics (Peakfinder8PeakDetectionParameters attribute) num_pixels (PeakList attribute) num_radials_to_send (RadialProfileParameters attribute)

O

om module om (MonitorParameters attribute) om.algorithms module om.algorithms.calibration module om.algorithms.common module om.algorithms.crystallography module om.algorithms.generic module om.algorithms.xes module om.data_retrieval_layer module om.data_retrieval_layer.data_event_handlers_asapo module om.data_retrieval_layer.data_event_handlers_common module om.data_retrieval_layer.data_event_handlers_files module om.data_retrieval_layer.data_event_handlers_http module om.data_retrieval_layer.data_event_handlers_psana module om.data_retrieval_layer.data_event_handlers_psana2 module om.data_retrieval_layer.data_event_handlers_zmq module om.data_retrieval_layer.data_sources_asapo module om.data_retrieval_layer.data_sources_common module om.data_retrieval_layer.data_sources_files module om.data_retrieval_layer.data_sources_http module om.data_retrieval_layer.data_sources_psana module om.data_retrieval_layer.data_sources_psana2 module om.data_retrieval_layer.data_sources_zmq module om.data_retrieval_layer.event_retrieval module om.graphical_interfaces module om.graphical_interfaces.common module om.graphical_interfaces.crystallography_gui module om.graphical_interfaces.crystallography_parameter_tweaker module om.graphical_interfaces.frame_viewer module om.graphical_interfaces.swaxs_gui module om.graphical_interfaces.xes_gui module om.lib module om.lib.cheetah module om.lib.crystallography module om.lib.event_management module om.lib.exceptions module om.lib.files module om.lib.geometry module om.lib.layer_management module om.lib.logging module om.lib.parameters module om.lib.protocols module om.lib.radial_profile module om.lib.xes module om.lib.zmq module om.lib.zmq_qt module

om.parallelization_layer module om.parallelization_layer.mpi module om.parallelization_layer.multiprocessing module om.processing_layer module om.processing_layer.cheetah module om.processing_layer.crystallography module om.processing_layer.swaxs module om.processing_layer.testing module om.processing_layer.xes module om.tools module om.tools.jungfrau_dark module om.tools.jungfrau_zmq_receiver module om_crystallography_gui command line option URL om_crystallography_parameter_tweaker command line option --config -c URL om_frame_viewer command line option URL om_monitor command line option --config --event-list --node-pool-size -c -l -n SOURCE om_swaxs_gui command line option URL om_xes`_gui command line option --time-resolved -t URL OmBaseAsapoDataSourceMixin (class in om.data_retrieval_layer.data_sources_asapo) OmBaseFileDataEventHandlerMixin (class in om.data_retrieval_layer.data_event_handlers_files) OmBaseFileDataSourceMixin (class in om.data_retrieval_layer.data_sources_files) OmBaseGenericDataSourceMixin (class in om.data_retrieval_layer.data_sources_http) OmBaseZmqDataSourceMixin (class in om.data_retrieval_layer.data_sources_zmq) OmCheetahMixin (class in om.processing_layer.cheetah) OmConfigurationFileReadingError OmConfigurationFileSyntaxError OmDataEventHandlerProtocol (class in om.lib.protocols) OmDataExtractionError OmDataSourceProtocol (class in om.lib.protocols) OmDetectorInterfacePsana2DataSourceMixin (class in om.data_retrieval_layer.data_sources_psana2) OmDetectorInterfacePsanaDataSourceMixin (class in om.data_retrieval_layer.data_sources_psana) OmEventDataRetrieval (class in om.data_retrieval_layer.event_retrieval) OmException OmGeometryError OmGuiBase (class in om.graphical_interfaces.common) OmHdf5FileReadingError OmHdf5PathError OmHdf5UnsupportedDataFormat OmHttpInterfaceInitializationError OmInvalidSourceError OmInvalidZmqUrl OmJungfrau1MDataSourceMixin (class in om.data_retrieval_layer.data_sources_common) OmMissingDataEventError OmMissingDataSourceClassError OmMissingDependencyError OmMissingLayerClassError OmMissingLayerModuleError OmMissingParameterError OmMissingParameterGroupError OmParallelizationProtocol (class in om.lib.protocols) OmParameters (class in om.lib.parameters) OmPeakDetectionProtocol (class in om.lib.protocols) OmProcessingProtocol (class in om.lib.protocols) OmWrongArrayShape OmWrongParameterTypeError OpalPsana (class in om.data_retrieval_layer.data_sources_psana) orig_max_fs (Panel attribute) orig_max_ss (Panel attribute) orig_min_fs (Panel attribute) orig_min_ss (Panel attribute) OUTPUT jungfrau_dark command line option OUTPUT_URL jungfrau_zmq_receiver command line option

P

panel (BadRegion attribute) Panel (class in om.lib.geometry) panels (Detector attribute) parallelization_layer (OmParameters attribute) peak_powder (ClassSumData attribute) peakfinder8_peak_detection (MonitorParameters attribute) Peakfinder8PeakDetection (class in om.algorithms.crystallography) Peakfinder8PeakDetectionParameters (class in om.lib.parameters) peakfinding_algorithm (CrystallographyParameters attribute) PeakList (class in om.algorithms.common) peakogram_intensity_bin_size (CrystallographyParameters attribute) peakogram_radius_bin_size (CrystallographyParameters attribute) phi (PixelMaps attribute) photon_energy (Beam attribute) photon_energy_from (Beam attribute) photon_energy_scale (Beam attribute) PilatusFilesEventHandler (class in om.data_retrieval_layer.data_event_handlers_files) PilatusSingleFrameFiles (class in om.data_retrieval_layer.data_sources_files)

PixelMaps (class in om.lib.geometry) post_processing_binning (CrystallographyParameters attribute) (RadialProfileParameters attribute) process_data() (CheetahProcessing method) (CrystallographyProcessing method) (OmProcessingProtocol method) (StreamingCheetahProcessing method) (SwaxsCheetahProcessing method) (SwaxsProcessing method) (TestProcessing method) (XesProcessing method) processed_directory (CheetahParameters attribute) processed_filename_extension (CheetahParameters attribute) processed_filename_prefix (CheetahParameters attribute) processing_layer (OmParameters attribute) Psana2DataEventHandler (class in om.data_retrieval_layer.data_event_handlers_psana2) psana_calibration_directory (DataRetrievalLayerParameters attribute) PsanaDataEventHandler (class in om.data_retrieval_layer.data_event_handlers_psana) pump_probe_experiment (CrystallographyParameters attribute)

R

radial_profile (MonitorParameters attribute) RadialProfile (class in om.algorithms.generic) RadialProfileAnalysis (class in om.lib.radial_profile) RadialProfileAnalysisPlots (class in om.lib.radial_profile) RadialProfileParameters (class in om.lib.parameters) radius (PixelMaps attribute) radius_bin_size (RadialProfileParameters attribute) rail_x (Panel attribute) rail_y (Panel attribute) rail_z (Panel attribute) RayonixMccdFilesEventHandler (class in om.data_retrieval_layer.data_event_handlers_files) RayonixMccdSingleFrameFiles (class in om.data_retrieval_layer.data_sources_files) RayonixPsana (class in om.data_retrieval_layer.data_sources_psana) report_speed() (EventCounter method) res (Panel attribute) responding_url (CheetahParameters attribute) (CrystallographyParameters attribute) retrieve_event_data() (AsapoDataEventHandler method) (EigerFilesDataEventHandler method) (EigerHttpDataEventHandler method) (EventListDataEventHandler method) (Jungfrau1MFilesDataEventHandler method) (Jungfrau1MZmqDataEventHandler method) (Lambda1M5FilesDataEventHandler method) (OmDataEventHandlerProtocol method) (OmEventDataRetrieval method) (PilatusFilesEventHandler method) (Psana2DataEventHandler method) (PsanaDataEventHandler method) (RayonixMccdFilesEventHandler method)

RichHandlerWithAggregation (class in om.lib.logging) rigid_group_collections (Detector attribute) rigid_groups (Detector attribute) roi1_qmax (RadialProfileParameters attribute) roi1_qmin (RadialProfileParameters attribute) roi2_qmax (RadialProfileParameters attribute) roi2_qmin (RadialProfileParameters attribute) rotation_in_degrees (XesParameters attribute) running_average_window_size (CrystallographyParameters attribute) (RadialProfileParameters attribute) (XesParameters attribute)

S

sample_detection (RadialProfileParameters attribute) satmap (Panel attribute) satmap_file (Panel attribute) save_sums() (CheetahClassSumsCollector method) send_data() (ZmqDataBroadcaster method) (ZmqResponder method) set_adc_thresh() (Peakfinder8PeakDetection method) set_bad_pixel_map() (Peakfinder8PeakDetection method) set_layout_info() (Peakfinder8PeakDetection method) set_local_bg_radius() (Peakfinder8PeakDetection method) set_max_pixel_count() (Peakfinder8PeakDetection method) set_max_res() (Peakfinder8PeakDetection method) set_min_pixel_count() (Peakfinder8PeakDetection method) set_min_res() (Peakfinder8PeakDetection method) set_minimum_snr() (Peakfinder8PeakDetection method) set_radius_pixel_map() (Peakfinder8PeakDetection method) should_broadcast_data() (EventCounter method) should_send_hit_frame() (EventCounter method) should_send_non_hit_frame() (EventCounter method) shutdown() (MpiParallelization method) (MultiprocessingParallelization method) (OmParallelizationProtocol method) size_estimation_method (RadialProfileParameters attribute) skip_rank_finalization() (AsapoDataEventHandler method) (EigerHttpDataEventHandler method) (EventListDataEventHandler method) (Jungfrau1MZmqDataEventHandler method) (OmBaseFileDataEventHandlerMixin method) (OmDataEventHandlerProtocol method) (Psana2DataEventHandler method) (PsanaDataEventHandler method)

snr (PeakList attribute) sort_frames_and_close_files() (CheetahlistFilesWriter method) SOURCE om_monitor command line option source (OmParameters attribute) speed_report_interval (CrystallographyParameters attribute) (RadialProfileParameters attribute) (XesParameters attribute) ss (PeakList attribute) ssx (Panel attribute) ssy (Panel attribute) ssz (Panel attribute) start() (MpiParallelization method) (MultiprocessingParallelization method) (OmParallelizationProtocol method) start_listening() (OmGuiBase method) (ZmqDataListener method) status_file_update_interval (CheetahParameters attribute) stop_listening() (OmGuiBase method) (ZmqDataListener method) StreamingCheetahProcessing (class in om.processing_layer.cheetah) sum_frames (ClassSumData attribute) SumHDF5Writer (class in om.lib.cheetah) SwaxsCheetahProcessing (class in om.processing_layer.swaxs) SwaxsGui (class in om.graphical_interfaces.swaxs_gui) SwaxsProcessing (class in om.processing_layer.swaxs)

T

TestProcessing (class in om.processing_layer.testing) time_resolved (XesParameters attribute) timestamp (FramelistData attribute) TimestampAsapo (class in om.data_retrieval_layer.data_sources_asapo) TimestampEiger16MHttp (class in om.data_retrieval_layer.data_sources_http) TimestampFromEvent (class in om.data_retrieval_layer.data_sources_common)

TimestampFromFileModificationTime (class in om.data_retrieval_layer.data_sources_files) TimestampJungfrau1MFiles (class in om.data_retrieval_layer.data_sources_files) TimestampJungfrau1MZmq (class in om.data_retrieval_layer.data_sources_zmq) TimestampPsana (class in om.data_retrieval_layer.data_sources_psana) TimestampPsana2 (class in om.data_retrieval_layer.data_sources_psana2) total_intensity_jet_threshold (RadialProfileParameters attribute) type (DataSourceParameters attribute)

U

update_gui() (CrystallographyGui method) (CrystallographyParameterTweaker method) (FrameViewer method) (OmGuiBase method) (SwaxsGui method) (XesGui method) update_plots() (CrystallographyPlots method) (RadialProfileAnalysisPlots method) (XesAnalysisAndPlots method)

update_status() (CheetahStatusFileWriter method) URL om_crystallography_gui command line option om_crystallography_parameter_tweaker command line option om_frame_viewer command line option om_swaxs_gui command line option om_xes`_gui command line option

V

VisualizationPixelMaps (class in om.lib.geometry)

visualize_data() (DataVisualizer method)

W

w (Panel attribute) wait_for_data() (CheetahProcessing method) (CrystallographyProcessing method) (OmProcessingProtocol method) (StreamingCheetahProcessing method) (SwaxsCheetahProcessing method) (SwaxsProcessing method) (TestProcessing method) (XesProcessing method)

Wave8TotalIntensityPsana (class in om.data_retrieval_layer.data_sources_psana) write_class_sums (CheetahParameters attribute) write_frame() (HDF5Writer method) write_sums() (SumHDF5Writer method)

X

x (PixelMaps attribute) (VisualizationPixelMaps attribute) xes (MonitorParameters attribute) XesAnalysisAndPlots (class in om.lib.xes)

XesGui (class in om.graphical_interfaces.xes_gui) XesParameters (class in om.lib.parameters) XesProcessing (class in om.processing_layer.xes) xfs (Panel attribute) xss (Panel attribute)

Y

y (PixelMaps attribute) (VisualizationPixelMaps attribute)

yfs (Panel attribute) yss (Panel attribute)

Z

z (PixelMaps attribute) ZmqDataBroadcaster (class in om.lib.zmq)

ZmqDataListener (class in om.lib.zmq_qt) zmqmessage (ZmqDataListener attribute) ZmqResponder (class in om.lib.zmq)